The goal of this first installment is to organize the code a bit so it's more readable,
clean up a bit of left over cruft, and manage link configurations (and links in general).

There's also a partial fix for the databits and stopbits. I'm unsure how to deal with the logic
around the 'is_cdc' variable, as I can't really follow what it's for.

Now works for more than Serial links

Moving methods from MainWindow to QGCApplication so that more things
can run without a window. Helpful for testing.

Plus a large number of other changes to allow for orderly shutdown of
objects without crashes or asserts. This is need for unit tests to
create/delete global state around every test.

This makes unit test output easier to read

This makes unit test output easier to read

This function is called automatically when a QSettings object is destroyed,
so is rarely needed to be called explicitly.

There are still some cases where
a QSettings object is passed-by-reference, so there I left the sync() calls as
it's unclear how permanent those objects are and if they'd call sync() before
application shutdown

Fix linux compiler warning

Largest change is that once a link is added to LinkManager it maintains
ownership and is responsible for delete. If you need to delete a link
use LinkManager::delete. Also added guard code to assert if a Link is
deleted outside of LinkManager.

- allow unit tests to use QGCApplication
- clear global singletons for each unit test run

Subclass of QMessageBox which re-implements the static public
functions. There are two reasons for this:
1) The QMessageBox implementation on OSX does now show the title
string. This leads to message boxes which don't make much sense. So on
OSX we set title to text and text to informative text.
2) If parent is NULL, we set parent to MainWindow::instance. This
prevents message boxes which can go behind MainWindow

Using QFileDialog directly on OS X can hang intermittently due to Qt
bug.

- Logging now always on to temp file
- User prompted to save temp file after disconnect
- Orphaned temp logs checked for on boot
- Logs saved to new save file location
- Log file starts/stops with first and last connnection

Centralize all connecting and disconnecting of links through
LinkManager::[Connect|Disconnect]Link api. Connect/Disconnect no longer
allowed through LinkInterface. This allows creation of new
LinkManager::setConnections[Suspended|Allowed] methods to disallow
connections as needed.